Cell culturing structure including growth medium and non-growth medium

ABSTRACT

A structure for culturing cells includes growth medium regions on a surface of the structure. Each of the growth medium regions includes a growth medium surface configured to receive and promote growth in a cell that is being cultured. The structure includes a non-growth medium. The non-growth medium includes a non-growth medium surface configured to receive the cell that is being cultured.

DOMESTIC PRIORITY

This application is a divisional of U.S. patent application Ser. No.15/671,713, titled “CELL CULTURING STRUCTURE INCLUDING GROWTH MEDIUM ANDNON-GROWTH MEDIUM” filed Aug. 8, 2017, the contents of which areincorporated herein by reference in its entirety.

BACKGROUND

The present invention generally relates to culturing cells. Morespecifically, the present invention relates to a cell culturingstructures and methods that include the use of a growth medium andnon-growth medium.

A single cell is the building block for human life. The genetic materialof each cell in the human body—itself composed of 100 trillioncells—holds the secret to inherited diseases, such as Tay-Sachs disease,cystic fibrosis, Alzheimer's disease, and other complex diseases likeheart disease. Processes for “culturing” cells have been developed forstudying the behavior of cells in response to normal and inducedexperimental stress, free of the variations that might arise in thewhole organism. The phrase “cell culture” refers to the removal of cellsfrom an animal or plant, along with the subsequent growth of the removedcells in a favorable artificial environment such as a Petri dish. Petridishes can be used to culture cells, such as prokaryotic, eukaryotic,and archaea cells. Prokaryotic cells include bacteria, and eukaryoticcells include fungal or human cells. Petri dishes can be provided with alayer of agar with nutrients, which serve as a growth medium. The growthmedium can be inoculated or plated with a microbe-laden sample thatgrows into individual colonies.

SUMMARY

Embodiments of the present invention are directed to a structure forculturing cells. A non-limiting example of the structure includes growthmedium regions on a surface of the structure. Each of the growth mediumregions includes a growth medium surface configured to receive andpromote growth in a cell that is being cultured. The structure includesa non-growth medium. The non-growth medium includes a non-growth mediumsurface configured to receive the cell that is being cultured.

Embodiments of the present invention are directed to a method formonitoring cultured cells. A non-limiting example of the method includesforming a structure for culturing cells. The structure includes growthmedium regions on a surface of the structure. Each of the growth mediumregions includes a growth medium surface configured to receive andpromote growth in a cell that is being cultured. The structure includesa non-growth medium. The non-growth medium includes a non-growth mediumsurface configured to receive the cell that is being cultured. Thestructure is inoculated with a sample to be monitored. A parameter ismeasured at a location of the structure after inoculating the structurewith the sample.

Embodiments of the present invention are directed to a method fordetermining an effective antibiotic concentration. A non-limitingexample of the method includes forming a structure for culturing cells.The structure includes growth medium regions on a surface of thestructure. Each of the growth medium regions includes a growth mediumsurface configured to receive and promote growth in a cell that is beingcultured and different growth medium regions include differingconcentrations of an antibiotic. The structure includes a non-growthmedium. The non-growth medium includes a non-growth medium surfaceconfigured to receive the cell that is being cultured. The methodincludes recording the concentrations of the antibiotic in each of thegrowth medium regions inoculating the structure with a bacteria. Themethod includes determining which of the growth medium regions stoppedgrowth of the bacteria. The method includes matching the growth mediumregions that stopped growth of the bacteria to the concentrations of theantibiotic in the growth medium regions that stopped growth.

Additional technical features and benefits are realized through thetechniques of the present invention. Embodiments and aspects of theinvention are described in detail herein and are considered a part ofthe claimed subject matter. For a better understanding, refer to thedetailed description and to the drawings.

BRIEF DESCRIPTION OF THE DRAWINGS

The specifics of the exclusive rights described herein are particularlypointed out and distinctly claimed in the claims at the conclusion ofthe specification. The foregoing and other features and advantages ofthe embodiments of the invention are apparent from the followingdetailed description taken in conjunction with the accompanying drawingsin which:

FIG. 1 depicts a perspective view of a structure for culturing cellsaccording to one or more embodiments of the invention;

FIG. 1A depicts a perspective view of a structure for culturing cellsaccording to one or more embodiments of the invention;

FIG. 2 depicts a top view of a structure for culturing cells accordingto one or more embodiments of the invention;

FIG. 3 depicts a cross-sectional view of the structure for culturingcells as shown in FIG. 2, along line A-B;

FIG. 4 depicts a top view of a structure for culturing cells accordingto one or more embodiments of the invention, as well as a cell;

FIG. 5 depicts a top view of a structure for culturing cells accordingto one or more embodiments of the invention;

FIG. 6 depicts a top view of a structure for monitoring cultured cellsaccording to one or more embodiments of the invention;

FIG. 7 depicts a top view of a structure for monitoring cultured cellsaccording to one or more embodiments of the invention;

FIG. 8 depicts a top view of a structure for monitoring cultured cellsaccording to one or more embodiments of the invention;

FIG. 9 depicts a top view of a structure for monitoring cultured cellsaccording to one or more embodiments of the invention;

FIG. 10 depicts a top view of a structure for monitoring cultured cellsaccording to one or more embodiments of the invention;

FIG. 11 depicts a top view of a structure for monitoring cultured cellsaccording to one or more embodiments of the invention;

FIG. 12 depicts a top view of a structure for monitoring cultured cellsaccording to one or more embodiments of the invention; and

FIG. 13 depicts a flow diagram illustrating a methodology according toone or more embodiments of the present invention.

The diagrams depicted herein are illustrative. There can be manyvariations to the diagram or the operations described therein withoutdeparting from the spirit of the invention. For instance, the actionscan be performed in a differing order or actions can be added, deletedor modified. Also, the term “coupled” and variations thereof describeshaving a communications path between two elements and does not imply adirect connection between the elements with no interveningelements/connections between them. All of these variations areconsidered a part of the specification.

In the accompanying figures and following detailed description of thedescribed embodiments, the various elements illustrated in the figuresare provided with two or three digit reference numbers. With minorexceptions, the leftmost digit(s) of each reference number correspond tothe figure in which its element is first illustrated.

DETAILED DESCRIPTION

Turning now to an overview of technologies that are more specificallyrelevant to aspects of the invention, as previously discussed herein,“cell culturing” involves the dispersal of cells in a favorableartificial environment composed of nutrient solutions, a suitablesurface to support the growth of cells, and ideal conditions oftemperature, humidity, and gaseous atmosphere. In such a system, aresearcher can precisely measure the response of alterations of the cellin culture, prospective drugs, the presence or absence of other kinds ofcells, carcinogenic agents, and viruses.

One example of a favorable artificial environment is a Petri dish, whichcan be used to culture cells such as prokaryotic, eukaryotic, andarchaea cells. Prokaryotic cells include bacteria, and eukaryotic cellsinclude fungal or human cells. The Petri dish can be provided with agrowth medium (e.g., a layer of agar with nutrients), which can beinoculated or plated with a microbe-laden sample that grows intoindividual colonies. A growth medium such as agar can behave as aconductive medium because it contains water, ions from salts (e.g.,sodium chloride (NaCl)), and nutrients such as glucose. The phrase “agarplate” is often used to describe a petri dish that contains a growthmedium.

The accurate determination of cell growth and viability is pivotal tomonitoring a bioprocess such as cell culturing. Cell growth in a Petridish having an agar growth medium can be monitored by opticalinspection, which can be performed with the naked eye or with the aid ofan instrument such as an optical microscope. However, known methods ofperforming optical inspections can have a negative impact on cellcultures. For example, optical inspections require exposing the cultureto light, which can be different in intensity and wavelengths than theillumination used while in storage for incubation. Some types ofbacteria require light for growth but others do not. The light requiredfor optical inspections can also affect nutrients in the agar growthmedium in the Petri dish. Accordingly, the illumination required foroptical inspections can skew the observed growth rate of cultures in aPetri dish.

Optical inspections, whether performed with the naked eye or by using anoptical microscope, can require removal of the Petri dish lid, even ifthe dish lid is transparent. Removing the Petri dish lid exposes theculture to the risk of contamination. Additionally, performing opticalinspection requires removing the culture from a controlled environmentthat provides temperature, pH, humidity, and oxygen content conditionsthat can be controlled and optimized for cell growth. Some microbialspecies must be kept in a strictly anaerobic environment because theyare extremely vulnerable to oxygen. Moreover, optical inspections aredone periodically and cannot provide or allow for a continuousmonitoring of the growth. Finally, the spatial resolution required toidentify changes in a single cell may or may not be feasible by opticalinspection, even using an optical microscope, which can have a spatialresolution of a few microns.

In addition to culturing cells, agar plates (i.e., Petri dishes withgrowth medium) can be used to test whether bacteria are affected byantibiotics. Examples of such test include Kirby-Bauer (KB) antibiotictesting (KB testing) and disc diffusion antibiotic sensitivity testing.Wafers containing antibiotics are placed in an agar plate with bacteria,and the agar plate is left to incubate. If an antibiotic stops thebacteria from growing or kills the bacteria, there is an area around thewafer known as a zone of inhibition where the bacteria are not visible.

The zone of inhibition results from diffusion of the antibiotic in thegrowth medium. Diffusion leads to a concentration gradient ofantibiotics, and the edge of the inhibition zone marks the minimalinhibitory concentration or the minimal antibiotic concentration that iseffective in stopping the bacteria growth. Diffusion depends on variousgrowth medium parameters such as temperature, viscosity, and the like.

Turning now to an overview of the aspects of the invention, one or moreembodiments of the invention address above-described shortcomings of theprior art by providing a novel cell culturing structure and methods ofusing the same. In embodiments of the invention, the cell culturingstructure includes a configuration of growth medium regions andnon-growth medium regions. In embodiments of the invention, the growthmedium regions are separated by the non-growth medium. The size andlocation of the growth regions and the non-growth regions of the cellculturing structure can be configured and arranged to ensure that onlycells of a particular size can grow. As used herein, the phrase“non-growth medium” refers to a medium that does not provide support,e.g., nutrients, for growth of the cell.

For example, in some embodiments of the invention, the distances betweenadjacent growth medium regions are selected such that, in order for acell to spread and be inoculated on the cell culturing structure, thecell must be larger than the distance between the growth medium regions.Cells having a smaller size than the distance between growth mediumregions will not be able to spread to adjacent growth medium regions andwill be confined to the growth medium region upon which the cells wereinitially deposited. The non-growth regions that are located between thegrowth regions do not provide support, e.g., nutrients, for growth ofcells. Consequently, according to embodiments of the invention, thespacing or gap size between the growth medium regions of the novel cellstructure can be chosen such that the cell structure promotes the growthof cells above a chosen size threshold.

In one or more embodiments of the invention, the novel cell culturingstructure is configured to generate measurable data indicating culturedcell growth. The measurable data can be continuously detected and storedwithout requiring manual optical observations. In embodiments of theinvention, the cell culturing structure is configured and arranged togenerate the above-described measurable data by including growth mediumregions separated by non-growth medium regions, along with conductivewiring or electrodes for measuring, for example, electrical impedancebetween the electrodes and across the cell culturing structure. Thenon-growth medium regions can be formed from an insulating material, andbecause the growth regions are separated by non-growth regions, thegrowth regions will not provide a conductive path between theelectrodes. However, a conductive colony of conductive cells (which areundergoing a culturing process) functions as a conductive path couplingthe electrodes, resulting in a lowering of the electrical impedancebetween the electrodes.

In embodiments of the invention, data measurement circuitry canretrieve, measure, and store the data measured from the electrodes.Accordingly, aspects of the invention address shortcomings of the priorart by providing methods for measuring data indicating cultured cellgrowth that reduce or eliminate the risk of culture contamination andprovide or allow for a continuous monitoring of cell growth.

In some embodiments of the invention, the formation of a conductivecolony of conductive cells (which are undergoing a culturing process)resulting in a lowering of a resistance between the electrodes ascompared to a resistance between the electrode in the absence of theconductive colony of conductive cells that form a conductive pathbetween the electrodes. Stated otherwise, resistance between theelectrodes is relatively higher in the absence of the conductive colonyof conductive cells that form a conductive path between the electrodes.Resistance between the electrodes can be continuously measured.Resistance data, and in particular a decrease in the resistance betweenthe electrodes, can be analyzed to make determinations about how thecultured cell is growing and evolving. The cells being tracked, thegrowth medium regions, and the current are chosen such that the currentdoes not skew the growth rate of the cultured cell.

In one or more embodiments of the invention, optical waveguides areplaced on the cell culturing structure, light is injected in a firstoptical waveguide, and light intensity in or from an adjacent secondoptical waveguide is measured by an optical power meter. The non-growthmedium can have an effective refractive index smaller than that of thematerial forming the optical waveguides, and because the growth regionsare separated by non-growth regions, light is prevented from leakingthrough the cell culturing structure from one of the optical waveguidesto the other through the growth regions. Thus, the cell culturingstructure does not provide a path for light to be transferred betweenthe optical waveguides. However, when a colony of cells grows so as tobridge the first optical waveguide and the adjacent second opticalwaveguide, a path is provided for light to be transferred between theoptical waveguides through water in the cells. Accordingly, lighttransferred between the optical waveguides can be continuously measuredand processed to track cell growth. The cells being tracked as well asthe growth medium included in the cell culturing structure are chosensuch that exposure to light does not skew the growth rate of the cells.

In one or more embodiments of the invention, the growth medium regions,which are separated by non-growth medium, include differingconcentrations of an antibiotic. The concentration of antibiotic in eachof the growth medium regions is recorded. The cell culturing structureis inoculated with a bacteria and it is determined which growth mediumregion(s) stopped the bacteria from growing or killed the bacteria. Thebacteria as well as the growth medium regions are chosen such thatoptical observation does not have a negative impact on growth of thebacteria, and determining which growth medium region(s) stopped thebacteria from growing or killed the bacteria can include opticalobservation. Matching the growth medium region(s) that stopped thebacteria from growing or killed the bacteria to the recordedconcentration of antibiotic in each of the growth medium regionsprovides information regarding the effective concentration(s) of theantibiotic and a minimum antibiotic concentration necessary to stop orkill the bacteria. Above-described aspects of the invention thus addressshortcomings of the prior art by allowing for determination of anaccurate minimum antibiotic concentration needed to stop bacteriawithout relying on a diffusion model or additional measurements of theantibiotic concentration in the growth medium.

Turning now to a more detailed description of aspects of the presentinvention, FIG. 1 depicts a perspective view of a structure 10 forculturing cells according to embodiments of the invention. As depictedin the non-limiting embodiment shown in FIG. 1, the structure 10includes non-growth medium 100. In some embodiments of the invention,the primary material of the structure 10 (other than the pores 101) canbe formed from the non-growth medium 100. In some embodiments of theinvention, the non-growth medium 100 need only be provided on an outersurface of the structure 10. The non-growth medium 100 separates thepores 101. In one or more embodiments of the invention, the non-growthmedium 100 surrounds each of the pores 101 on the surface of thestructure 10.

In one or more embodiments of the invention, the non-growth medium 100is an electrically insulating material such as hafnium oxide (HfO₂),silicon dioxide (SiO₂), aluminum oxide (Al₂O₃), or plastic. The pores101 and the non-growth medium 100 can extend through an entire thicknessof the structure 10 and can cover the floor or bottom of a Petri dish.

The pores 101 can be formed in the non-growth medium 100 using knownmethods of patterning such as, for example, lithography and reactive ionetching, molding, or self-assembly methods such as those used for theformation of porous anodized alumina. The non-growth medium 100 caninclude anodized alumina, and the pores 101 can include a self-assembledarray of pores 101 in the anodized alumina. In one or more embodimentsof the invention, the non-growth medium 100 includes silicon with anoxidized surface, or surface coated with an oxide. The patterned siliconcan be formed by a Bosch process. The patterned silicon can be oxidizedor coated with an insulator such as an oxide or a nitride.

FIG. 1A depicts a perspective view of the structure 10 for culturingcells according to embodiments of the invention. As depicted in thenon-limiting embodiment shown in FIG. 1A, the pores 101 are filled withgrowth medium, for example, agar, to form discrete growth medium regions102. The discrete growth medium regions 102 can be in the form of, forexample, pillars, cylinders, or an array thereof.

In filling the pores 101 with growth medium (to form the discrete growthmedium regions 102), the growth medium can form a continuous thin film(not depicted) on a top surface of the structure 10. For example, thepores 101 can be overfilled with growth medium, which can result inexcess growth medium on a top surface of the structure 10. In one ormore embodiments of the invention, growth medium is removed from asurface of the structure 10 by shaving or scraping the top surface ofthe structure 10. In some embodiments of the invention, a top surface ofthe structure 10 includes or is coated with a material such that thegrowth medium 102 does not wet. For example, the surface material ischosen such that the contact angle of a liquid agar with the surface islarger than 90° so the agar will not wet the surface. The choice ofsurface materials is explained below in more detail, with reference toFIGS. 2 and 3.

According to one or more embodiments of the invention, at least one ofthe location, pattern, and size of the pores 101 in the structure 10 forculturing cells as depicted in the non-limiting embodiment shown in FIG.1 can be varied. Furthermore, the structure can further includeadditional materials to aid in the formation of the structure 10 forculturing cells as depicted in the non-limiting embodiment shown in FIG.1A.

Thus, FIG. 2 depicts a top view of a structure 11 for culturing cellsaccording to one or more embodiments of the invention, and FIG. 3depicts a cross-sectional view of the structure 11 for culturing cellsas shown in FIG. 2, along the line A-B. As depicted in FIGS. 2 and 3,and as best shown in FIG. 3, a hydrophobic coating 203 is formed on atop surface of the non-growth medium 200 adjacent to a groove or pore201 in the non-growth medium 200. The pore 201 also includes ahydrophilic coating 204 formed on sidewalls of the pore 201. Thehydrophilic coating 204 extends through the non-growth medium 200. Thepore 201 can include an upper portion having a larger diameter than alower portion of the pore 201. The hydrophilic coating 204 can coatsidewalls of the lower portion of the pore 201, sidewalls of the upperportion of the pore 201, and a lower surface of the upper portion of thepore 201. The hydrophobic coating 203 formed on a top surface of thenon-growth medium 11 repels a growth medium (not depicted) containingwater, while the hydrophilic coating 204, which attracts the growthmedium containing water, draws the growth medium containing water intothe pore. Thus, growth medium containing water is minimized or preventedfrom forming on a top surface of the structure 11.

According to one or more embodiments of the invention, at least one ofthe location, pattern, and size of the growth medium regions 102 in thestructure 10 for culturing cells as depicted in the non-limitingembodiment shown in FIG. 1A can be varied. In some embodiments, the sizeand pattern of growth medium regions 102 are chosen, for example, topromote cell growth.

Thus, FIG. 4 depicts a top view of the structure 12 for culturing cellsas shown in FIG. 1, as well as a cell 405 dispersed onto a surface ofthe structure 12. As depicted in the non-limiting embodiment shown inFIG. 4, the cell 405 is overlaid on portions of the non-growth medium400 and the discrete growth medium regions 402, and the size of the cell405 is larger than a distance between the discrete growth medium regions402. Accordingly, the cell 405 contacts a plurality of growth mediumregions 402, which provide sufficient nutrients to support growth of thecell 405, and the culture grows. The cell can be conductive, and watercontent in the cell can allow for light to transfer through the cell andbetween adjacent cells (not depicted).

The size of a single cell 405 can be, for example, up to severalmicrometers, depending on cell type. In one or more embodiments of theinvention, the cross-sectional area of each of the discrete growthmedium regions 402 are from about 20 nm to about 200 microns or aboutfrom about 1 micron to about 18 microns. The distance between thediscrete growth medium regions 402 can be in the range of from about 20nm to about 200 nm.

FIG. 5 depicts a top view of a structure 13 for culturing cellsaccording to one or more embodiments of the invention. As depicted inthe non-limiting embodiment shown in FIG. 5, the size of the cell 505 issmaller than the distance between adjacent discrete growth mediumregions 502. The discrete growth medium regions 502 do not separatelyprovide sufficient nutrients to support growth of the cell 505, andculture growth is prohibited. In other words, cells require contact withseveral adjacent growth regions to grow. The distance between thediscrete growth medium regions 502 can be adjusted to enable only cellsabove a certain size threshold to grow. Cells smaller than the distancebetween the discrete growth medium regions 502 cannot spread to the nextdiscrete portion of the growth medium. In this manner, the distancebetween the discrete growth medium regions 502 can be used to select thegrowth of cells above a predetermined size and prohibit the growth ofsmaller cells.

The structure 13 can serve as a selective medium without the need toalter other growth conditions such as growth medium or use of selectiveantibiotics. For example, a cellular culture of eukaryote cellscontaminated by bacteria smaller than the eukaryote cells can bedecontaminated using a distance between the discrete growth mediumregions 502 smaller than the size of the eukaryote cells and larger thanthat the size of the bacteria. In one or more embodiments of theinvention, the structure 13 is applied in other cell growth arrangementssuch as micro wells.

Provided herein are several structures that allow electrical monitoringof the culture growth. The electrical monitoring enables continuousmonitoring of the culture from the early stage of the growth and can bedone in-situ, which reduces or eliminates the risk of culturecontamination. The continuous monitoring can be done without the need totransfer a Petri dish to a monitoring instrument, such as an opticalmicroscope, which also reduces or eliminates the risk of culturecontamination.

FIG. 6 depicts a top view of a structure 14 for monitoring culturedcells according to one or more embodiments of the invention. As depictedin the non-limiting embodiment shown in FIG. 6, a first conductiveelectrodes 606 and a second conductive electrode 606A are configured andarranged as shown on the structure 14, which includes non-growth medium600 and discrete growth medium regions 602. The electrodes 606, 606A areconnected to an electrical measurement device 607. The electricalmeasurement device 607 can be an impedance meter that can measure theimpedance between the electrodes 606, 606A. In one or more embodimentsof the invention, the electrodes 606, 606A include TiN. In embodimentsof the invention, the non-growth medium 600 is configured to includeinsulating material, and the structure 14 can be a good insulator. As aresult, there will not be a conductive path between the electrodes 606,606A. A controller or processor 607A connected to the matrix chip (notdepicted) or electrical measurement device, such as an Ohm meter, cancontinuously, continually, or periodically measure the resistancebetween pairs of electrodes in the array. In the example shown in FIG.6, no cells are currently being cultured.

The culture can be inoculated onto the structure 14, for example, bystreaking or printing. Lines of culture can initially be inoculated in amanner parallel to the electrodes 606, 606A. In one or more embodimentsof the invention, the inoculation of the culture is automated. In one ormore embodiments of the invention, the inoculation of the culture isautomated using a jet printer. Alignment of the culture lines withrespect to the electrodes 606, 606A can be achieved using alignmentmarks that can also be printed on the structure 14 when the electrodes606, 606A are formed.

FIG. 7 depicts a top view of the structure 14 for monitoring culturedcells according to one or more embodiments of the invention. As depictedin the non-limiting embodiment shown in FIG. 7, the structure 14 allowsfor the formation of a conductive colony of conductive cells 705 thatfunctions as a conductive path coupling electrodes 606, 606A.Consequently, the resistance between the electrodes 606, 606A islowered. The electrodes 606, 606A are connected to an electricalmeasurement device 607. Resistance between the electrodes 606, 606A canbe continuously measured. Resistance data can be analyzed to makedeterminations about how the cells 705 are growing and evolving. Thecells 705, the growth medium regions 602, and the current are chosensuch that the current does not skew the growth rate of the cells 705.

For ease of discussion the structure 14 is depicted as including asingle pair of electrodes 606, 606A. However, the structure 14 caninclude any number of electrodes. In one or more embodiments of theinvention, an array of parallel electrodes (not depicted) is printed orpattered on the structure 14. The distance between adjacent electrodescan vary from about one micron to hundreds of microns. The growingculture can form a colony coupling the pair of electrodes with thesmallest spacing. Over time, the colony can grow bigger and can overlapelectrode pairs with increasingly larger spacing.

The array of electrodes can provide a more sensitive detection of cellgrowth than, for example, a single pair of electrodes. A matrix chip(not depicted) can be connected to the array of electrodes to enable theselection of any pair of electrodes, and resistance between theelectrodes can be measured in a similar manner as is done for a singlepair of electrodes. A conductive colony including conductive cells needonly couple a selected pair of electrodes to provide a change in theimpedance measured between the selected pair of electrodes. The spacingof the selected pair of electrodes can be less than a spacing betweenother electrodes, which are not coupled by the colony.

As described above, the controller or processor 607A can continuously,continually, or periodically measure the resistance between pairs ofelectrodes in the array. The measured resistance between pairs ofelectrodes coupled by the colony is lower than the resistance of theportions of the structure 14 not coupled by the colony. The controlleror processor 607A can record resistance data as a function of time. Agraph of the colony size as a function of the growth time becauseinoculation can be generated, and the growth rate can be calculated. Theprocessor can be included in, for example, a programmable dataprocessing apparatus or device.

The colony growth rate can be studied as a function of cell type such asgenetically modified cells, ambient conditions, medium composition,and/or use of drugs such as antibiotics. Monitoring can require only anelectrical connection to one or more Petri dishes, and the monitoring ofcell growth can be done continuously and in the storage place of thePetri dishes. In one or more embodiments of the invention, theelectrical connection includes use of a cable or a radio-frequencyidentification (RFID). In this manner, monitoring can be done without aneed to transfer the Petri dish to an optical microscope or to removethe lid of the Petri dish.

FIG. 8 depicts a top view of a structure 15 for monitoring culturedcells according to one or more embodiments of the invention. As depictedin the non-limiting embodiment shown in FIG. 8, non-growth medium 800and discrete growth medium regions 802 are located between growth mediumregions 806, 806A in the form of trenches. The growth medium regions806, 806A are connected to an electrical measurement device 607, whichcan measure the impedance between the growth medium regions 806, 806A.When a culture including conductive cells forms a conductive colony (notdepicted) coupling the growth medium regions 806, 806A, the impedancechanges. This change in impedance is measured over time according to oneor more embodiments of the invention. The growth medium regions 806,806A replace the electrodes that are present the embodiment depicted inFIGS. 6-7. Accordingly, electrodes are not necessary and cost savingsand/or ease in forming the structure 15 can be realized. In the exampleshown in FIG. 8, no cells are currently being cultured.

FIG. 9 depicts a top view of a structure 16 for monitoring culturedcells according to one or more embodiments of the invention. As depictedin the non-limiting embodiment shown in FIG. 9, discrete growth mediumregions 908 in the form of interdigitated trenches are each connected toan electrode 606, 606A and are separated by non-growth medium 900. Theelectrodes 606, 606A are connected to an electrical measurement device607, which can measure the impedance between the electrodes 606, 606A.As described above, each of the discrete growth medium regions 908 iseach connected to an electrode 606, 606A, and adjacent discrete growthmedium regions 908 are connected to different electrodes.

The structure 16 can provide a more sensitive detection of cell growththan, for example, the embodiment depicted in FIGS. 6-7. A conductivecolony (not depicted) including conductive cells need only coupleadjacent discrete growth medium regions 908, which are connected todifferent electrodes, rather than coupling the electrodes 606, 606A, toprovide a change in the impedance measured between the electrodes 606,606A. For example, the electrodes can be spaced farther apart thenadjacent discrete growth medium regions 908. Moreover, further growth ofthe colony (not depicted) to couple more than two discrete growth mediumregions 908 can resultantly provide greater coupling between theelectrodes 606, 606A. Further change in the impedance measured betweenthe electrodes 606, 606A can therefore indicate further growth of thecolony (not depicted). Additionally, cost savings can be realized byforming the discrete growth medium regions 908, as opposed to thediscrete growth medium regions 602 depicted in FIGS. 6-7. In the exampleshown in FIG. 9, no cells are currently being cultured.

FIG. 10 depicts a top view of a structure 17 for monitoring culturedcells according to one or more embodiments of the invention. As depictedin the non-limiting embodiment shown in FIG. 10, discrete growth mediumregions 1109 in the form of double serpentine trenches are eachconnected to an electrode 606, 606A and are separated by non-growthmedium 1000. The electrodes 606, 606A are connected to an electricalmeasurement device 607, which can measure the impedance between theelectrodes 606, 606A. As described above, each of the discrete growthmedium regions 1109 is each connected to an electrode 606, 606A, andadjacent discrete growth medium regions 1109 are connected to differentelectrodes.

The structure 17 can provide a more sensitive detection of cell growththan, for example, the embodiment depicted in FIGS. 6-7. Conductivecells (not depicted) need only couple adjacent discrete growth mediumregions 1109, which are connected to different electrodes, rather thancoupling the electrodes 606, 606A, to provide a change in the impedancemeasured between the electrodes 606, 606A. For example, the electrodescan be spaced farther apart then adjacent discrete growth medium regions1109. Moreover, further growth of the colony (not depicted) to coupleadditional portions of the discrete growth medium regions 1109 canresultantly provide greater coupling between the electrodes 606, 606A.Further change in the impedance measured between the electrodes 606,606A can therefore indicate further growth of the colony (not depicted).Additionally, a smaller number of the discrete growth medium regions1109 can be needed as compared to the discrete growth medium regions1109 depicted in FIG. 10, and less connections to the electrodes 606,606A can be needed. Accordingly, cost savings and/or ease in forming thestructure 17 can be realized. In the example shown in FIG. 10, no cellsare currently being cultured.

FIG. 11 depicts a top view of a structure 18 for monitoring culturedcells according to one or more embodiments of the invention. As depictedin the non-limiting embodiment shown in FIG. 11, a first opticalwaveguide 1200 and a second optical waveguide 1200A, which aresubstantially parallel to each other, are configured and arranged asshown on the structure 18, which includes non-growth medium 100 anddiscrete growth medium regions 1102. The optical waveguides 1200, 1200Acan be formed using materials such as a polymer, plastic, or glass. Inone or more embodiments of the invention, the polymer is a siliconeresin. For ease of discussion, the structure 18 is depicted as includinga single pair of waveguides 1200, 1200A. However, the structure 18 caninclude any number of optical waveguides.

In embodiments of the invention, portions of the structure 18 areconfigured to have effective refractive indices that are smaller thanthat of the material forming the optical waveguides. As a result, lightcannot leak from one of the first optical waveguide 1200 to the secondoptical waveguide 1200A. The low refractive index can be achieved bymaking the non-growth medium 1100 between the discrete growth mediumregions 1102 porous. In one or more embodiments of the invention, a lowrefractive index is obtained by inserting air gaps or pockets in thenon-growth medium 1100 between the discrete growth medium regions 1102.In one or more embodiments of the invention, the refractive index of thenon-growth medium 1100 between the discrete growth medium regions 1102approaches that of air (i.e., the refractive index n can be about 1).

To monitor the culture growth, a light source (not depicted) isconnected to the first waveguide 1200 to inject light 1201 therein, andthe amount of light 1201A emitted from the second waveguide is measured.Light 1201 is injected in the first waveguide 1200 and the intensity oflight (if any) that passes from the first waveguide 1200 to the secondwaveguide 1200A is measured by, for example, an optical power meter1202. In the example shown in FIG. 11, no cells are currently beingcultured and no light is passed from the first waveguide 1200 to thesecond waveguide 1200A. In the absence of an active cell culturingactivity, there are not cells to optically couple the first and secondwaveguides 1200, 1200A. Accordingly, in the example shown in FIG. 11,the first and second waveguides 1200, 1200A are optically de-coupled,and little or none of light 1201 is leaked or transferred between thefirst and second waveguides 1200, 1200A. Because little or no lightleaks or is transferred between the first and second waveguides 1200,1200A, the light 1201A emitted from the second waveguide 1200A anddetected by the optical power meter 1202 is substantially zero, andsubstantially all of the light 1201 (depending on transmission lossesand length of the first waveguide 1200) that enters the first waveguide1200 would exit as light 1201B.

FIG. 12 depicts a top view of the structure 18 for monitoring culturedcells according to one or more embodiments of the invention. As depictedin the non-limiting embodiment shown in FIG. 12, cells 1105 are activelybeing cultured using the structure 18. The cells 1105 provide a path foroptically coupling light 1201A′, which is a portion of the light 1201that enters the first waveguide 1200, to the second waveguide 1200A.Light 1201A′ is transferred between the first and second waveguides(with transmission losses from traveling through a portion of the firstwaveguide 1200, the cells 1105 and the second waveguide 1200A) and isdetected as light 1200A by the optical power meter 1202. The cells 1105couple the first and second waveguides 1200, 1200A due to, for example,the water content of the cells 1105, which allows for light to transferthrough cells, between adjacent cells, and from the first waveguide 1200to the second waveguide 1200A. Light intensity in or from the opticalwaveguide adjacent to the optical waveguide in which light is injectedcan be continuously measured by the optical power meter 1202. Opticalpower data can be analyzed to make determinations about how the culturedcell is growing and evolving, thus avoiding the shortcomings describedherein associated with tracking cultured cell growth and evolutionthrough optical observations. The cells 1105 as well as the growthmedium 1102 are chosen such that exposure to the light 1201 does notskew the growth rate of the cells 1105.

A controller or processor 1202A connected to the optical power meter1202 can continuously, continually, or periodically measure the lightintensity in or from the first and second optical waveguides 1200,1200A. The controller or processor 1202A can record light intensity dataas a function of time. A graph of the size of the cells 1105 as afunction of the growth time because inoculation can be generated, andthe growth rate can be calculated. The processor can be included in, forexample, a programmable data processing apparatus or device.

FIG. 13 depicts a block/flow diagram of an exemplary method fordetermining an effective antibiotic concentration according toembodiments of the invention. At block 1300, differing concentrations ofan antibiotic are provided to different discrete growth medium regionsof a cell culturing structure. The cell culturing structure includesnon-growth medium regions separating the discrete growth medium regions.At block 1301, the concentration of antibiotic in each of the growthmedium regions is recorded. At block 1302, the cell culturing structureis inoculated with a bacteria. At block 1303, it is determined whichgrowth medium region(s) stopped the bacteria from growing or killed thebacteria. The bacteria as well as the growth medium regions are chosensuch that optical observation does not have a negative impact on growthof the bacteria. Determining which growth medium region(s) stopped thebacteria from growing or killed the bacteria can include opticalobservation. At block 1304, the growth medium region(s) that stopped thebacteria from growing or killed the bacteria is matched to the recordedconcentration of antibiotic in each of the growth medium regions. Thematching provides information regarding what concentration(s) of theantibiotic stops growth of or kills the bacteria including a minimumantibiotic concentration to stop or kill the bacteria. An accurateminimum antibiotic concentration needed to stop bacteria can bedetermined without relying on a diffusion model or additionalmeasurements of the antibiotic concentration in the growth medium.

More than one embodiment of the invention can be combined. For example,in one or more embodiments of the invention, an array of parallelelectrodes is provided on a cell culturing structure, which includesnon-growth medium regions separating the discrete growth medium regions.The electrodes are connected to an electrical measurement device, whichcan measure the impedance between any of the electrodes. A matrix chipcan be connected to the array of electrodes to enable the selection ofany pair of electrodes. Differing concentrations of an antibiotic areprovided to different discrete growth medium regions of the cellculturing structure. The concentration of antibiotic in each of thegrowth medium regions is recorded. The cell culturing structure isinoculated with a bacteria. Growth medium regions including an effectiveantibiotic concentrations will kill the bacteria. Impedance between aselected pair of electrodes is measured. Different pairs of electrodeshave different growth medium regions therebetween and differentconcentrations of antibiotic therebetween. The concentration ofantibiotic between each pair of electrodes is recorded.

An impedance measured between a selected pair of electrodes willincrease when the bacteria are killed by the antibiotic in the growthmedium regions therebetween and the selected pair of electrodes is nolonger coupled by the bacteria. Whether the bacteria is killed by anantibiotic concentration can be determined by comparing impedancemeasured between the selected pair of electrodes and another pair ofelectrodes and/or comparing impedance measured between the selected pairof electrodes and a reference measurement between the selected pair ofelectrodes taken immediately after inoculation of the bacteria.Moreover, matching the selected pair of electrodes with increasedimpedance measured therebetween to the concentration of antibiotictherebetween can provide information regarding what concentration(s) ofthe antibiotic kill the bacteria including a minimum antibioticconcentration to kill the bacteria. In this manner, determining whichgrowth medium region(s) killed the bacteria can avoid opticalobservation.

Various embodiments of the present invention are described herein withreference to the related drawings. Alternative embodiments can bedevised without departing from the scope of this invention. Althoughvarious connections and positional relationships (e.g., over, below,adjacent, etc.) are set forth between elements in the followingdescription and in the drawings, persons skilled in the art willrecognize that many of the positional relationships described herein areorientation-independent when the described functionality is maintainedeven though the orientation is changed. These connections and/orpositional relationships, unless specified otherwise, can be direct orindirect, and the present invention is not intended to be limiting inthis respect. Accordingly, a coupling of entities can refer to either adirect or an indirect coupling, and a positional relationship betweenentities can be a direct or indirect positional relationship. As anexample of an indirect positional relationship, references in thepresent description to forming layer “A” over layer “B” includesituations in which one or more intermediate layers (e.g., layer “C”) isbetween layer “A” and layer “B” as long as the relevant characteristicsand functionalities of layer “A” and layer “B” are not substantiallychanged by the intermediate layer(s).

The following definitions and abbreviations are to be used for theinterpretation of the claims and the specification. As used herein, theterms “comprises,” “comprising,” “includes,” “including,” “has,”“having,” “contains” or “containing,” or any other variation thereof,are intended to cover a non-exclusive inclusion. For example, acomposition, a mixture, process, method, article, or apparatus thatcomprises a list of elements is not necessarily limited to only thoseelements but can include other elements not expressly listed or inherentto such composition, mixture, process, method, article, or apparatus.

Additionally, the term “exemplary” is used herein to mean “serving as anexample, instance or illustration.” Any embodiment or design describedherein as “exemplary” is not necessarily to be construed as preferred oradvantageous over other embodiments or designs. The terms “at least one”and “one or more” are understood to include any integer number greaterthan or equal to one, i.e. one, two, three, four, etc. The terms “aplurality” are understood to include any integer number greater than orequal to two, i.e. two, three, four, five, etc. The term “connection”can include an indirect “connection” and a direct “connection.”

References in the specification to “one embodiment,” “an embodiment,”“an example embodiment,” etc., indicate that the embodiment describedcan include a particular feature, structure, or characteristic, butevery embodiment may or may not include the particular feature,structure, or characteristic. Moreover, such phrases are not necessarilyreferring to the same embodiment. Further, when a particular feature,structure, or characteristic is described in connection with anembodiment, it is submitted that it is within the knowledge of oneskilled in the art to affect such feature, structure, or characteristicin connection with other embodiments whether or not explicitlydescribed.

For purposes of the description hereinafter, the terms “upper,” “lower,”“right,” “left,” “vertical,” “horizontal,” “top,” “bottom,” andderivatives thereof shall relate to the described structures andmethods, as oriented in the drawing figures. The terms “overlying,”“atop,” “on top,” “positioned on” or “positioned atop” mean that a firstelement, such as a first structure, is present on a second element, suchas a second structure, wherein intervening elements such as an interfacestructure can be present between the first element and the secondelement. The term “direct contact” means that a first element, such as afirst structure, and a second element, such as a second structure, areconnected without any intermediary conducting, insulating orsemiconductor layers at the interface of the two elements.

The terms “about,” “substantially,” “approximately,” and variationsthereof, are intended to include the degree of error associated withmeasurement of the particular quantity based upon the equipmentavailable at the time of filing the application. For example, “about”can include a range of ±8% or 5%, or 2% of a given value.

The present invention may be a system, a method, and/or a computerprogram product at any possible technical detail level of integration.The computer program product may include a computer readable storagemedium (or media) having computer readable program instructions thereonfor causing a processor to carry out aspects of the present invention.

The computer readable storage medium can be a tangible device that canretain and store instructions for use by an instruction executiondevice. The computer readable storage medium may be, for example, but isnot limited to, an electronic storage device, a magnetic storage device,an optical storage device, an electromagnetic storage device, asemiconductor storage device, or any suitable combination of theforegoing. A non-exhaustive list of more specific examples of thecomputer readable storage medium includes the following: a portablecomputer diskette, a hard disk, a random access memory (RAM), aread-only memory (ROM), an erasable programmable read-only memory (EPROMor Flash memory), a static random access memory (SRAM), a portablecompact disc read-only memory (CD-ROM), a digital versatile disk (DVD),a memory stick, a floppy disk, a mechanically encoded device such aspunch-cards or raised structures in a groove having instructionsrecorded thereon, and any suitable combination of the foregoing. Acomputer readable storage medium, as used herein, is not to be construedas being transitory signals per se, such as radio waves or other freelypropagating electromagnetic waves, electromagnetic waves propagatingthrough a waveguide or other transmission media (e.g., light pulsespassing through a fiber-optic cable), or electrical signals transmittedthrough a wire.

Computer readable program instructions described herein can bedownloaded to respective computing/processing devices from a computerreadable storage medium or to an external computer or external storagedevice via a network, for example, the Internet, a local area network, awide area network and/or a wireless network. The network may comprisecopper transmission cables, optical transmission fibers, wirelesstransmission, routers, firewalls, switches, gateway computers and/oredge servers. A network adapter card or network interface in eachcomputing/processing device receives computer readable programinstructions from the network and forwards the computer readable programinstructions for storage in a computer readable storage medium withinthe respective computing/processing device.

Computer readable program instructions for carrying out operations ofthe present invention may be assembler instructions,instruction-set-architecture (ISA) instructions, machine instructions,machine dependent instructions, microcode, firmware instructions,state-setting data, configuration data for integrated circuitry, oreither source code or object code written in any combination of one ormore programming languages, including an object oriented programminglanguage such as Smalltalk, C++, or the like, and procedural programminglanguages, such as the “C” programming language or similar programminglanguages. The computer readable program instructions may executeentirely on the user's computer, partly on the user's computer, as astand-alone software package, partly on the user's computer and partlyon a remote computer or entirely on the remote computer or server. Inthe latter scenario, the remote computer may be connected to the user'scomputer through any type of network, including a local area network(LAN) or a wide area network (WAN), or the connection may be made to anexternal computer (for example, through the Internet using an InternetService Provider). In some embodiments, electronic circuitry including,for example, programmable logic circuitry, field-programmable gatearrays (FPGA), or programmable logic arrays (PLA) may execute thecomputer readable program instruction by utilizing state information ofthe computer readable program instructions to personalize the electroniccircuitry, in order to perform aspects of the present invention.

Aspects of the present invention are described herein with reference toflowchart illustrations and/or block diagrams of methods, apparatus(systems), and computer program products according to embodiments of theinvention. It will be understood that each block of the flowchartillustrations and/or block diagrams, and combinations of blocks in theflowchart illustrations and/or block diagrams, can be implemented bycomputer readable program instructions.

These computer readable program instructions may be provided to aprocessor of a general purpose computer, special purpose computer, orother programmable data processing apparatus to produce a machine, suchthat the instructions, which execute via the processor of the computeror other programmable data processing apparatus, create means forimplementing the functions/acts specified in the flowchart and/or blockdiagram block or blocks. These computer readable program instructionsmay also be stored in a computer readable storage medium that can directa computer, a programmable data processing apparatus, and/or otherdevices to function in a particular manner, such that the computerreadable storage medium having instructions stored therein comprises anarticle of manufacture including instructions which implement aspects ofthe function/act specified in the flowchart and/or block diagram blockor blocks.

The computer readable program instructions may also be loaded onto acomputer, other programmable data processing apparatus, or other deviceto cause a series of operational steps to be performed on the computer,other programmable apparatus or other device to produce a computerimplemented process, such that the instructions which execute on thecomputer, other programmable apparatus, or other device implement thefunctions/acts specified in the flowchart and/or block diagram block orblocks.

The flowchart and block diagrams in the Figures illustrate possibleimplementations of fabrication and/or operation methods according tovarious embodiments of the present invention. Variousfunctions/operations of the method are represented in the flow diagramby blocks. In some alternative implementations, the functions noted inthe blocks can occur out of the order noted in the Figures. For example,two blocks shown in succession can, in fact, be executed substantiallyconcurrently, or the blocks can sometimes be executed in the reverseorder, depending upon the functionality involved.

The descriptions of the various embodiments of the present inventionhave been presented for purposes of illustration, but are not intendedto be exhaustive or limited to the embodiments described. Manymodifications and variations will be apparent to those of ordinary skillin the art without departing from the scope and spirit of the describedembodiments. The terminology used herein was chosen to best explain theprinciples of the embodiments, the practical application or technicalimprovement over technologies found in the marketplace, or to enableothers of ordinary skill in the art to understand the embodimentsdescribed herein.

What is claimed is:
 1. A structure for culturing cells, the structurecomprising: growth medium regions formed in a plurality of pores on asurface of the structure, wherein each of the growth medium regionsincludes a growth medium surface configured to receive and promotegrowth in a cell that is being cultured; and a non-growth mediumcomprising the plurality of pores, wherein sidewalls of the pores arecoated with a hydrophilic coating, and wherein a topmost surface of thenon-growth medium is coated with a hydrophobic coating.
 2. The structureof claim 1, wherein the non-growth medium surface separates a firstgrowth medium surface of the growth medium regions from a second growthmedium surface of the growth medium regions.
 3. The structure of claim1, wherein the non-growth medium surface surrounds a growth mediumsurface of at least one of the growth medium regions.
 4. The structureof claim 1, wherein the growth medium comprises agar.
 5. The structureof claim 1, wherein the non-growth medium comprises an electricallyinsulating material.
 6. The structure of claim 1, wherein a distancebetween adjacent growth medium regions is configured and arranged to beless than a size of a cell that has been targeted for culturing usingthe structure.
 7. The structure of claim 1, wherein the growth mediumsurface of each of the growth medium regions comprises a surface area ofabout 20 nm to about 200 microns.
 8. The structure of claim 1, whereinthe growth medium surface of each of the growth medium regions isseparated from a nearest growth medium surface by about 20 nm to about200 nm.
 9. The structure of claim 1, wherein the non-growth mediumcomprises anodized alumina.
 10. The structure of claim 10, wherein thegrowth medium regions fill a self-assembled array of pores in theanodized alumina.
 11. A system for culturing cells, the systemcomprising: a structure for culturing cells, the structure comprising:growth medium regions formed in a plurality of pores on a surface of thestructure, wherein each of the growth medium regions includes a growthmedium surface configured to receive and promote growth in a cell thatis being cultured; and a non-growth medium comprising the plurality ofpores, wherein sidewalls of the pores are coated with a hydrophiliccoating, and wherein a topmost surface of the non-growth medium iscoated with a hydrophobic coating; and a device configured for measuringa parameter on the structure after inoculating the structure with asample, the device comprising: a first electrode at a first location ona surface of the structure; a second electrode at a second location on asurface of the structure; and a processor configured to measureelectrical impedance between the first electrode and the secondelectrode.
 12. The system of claim 11, wherein the processor is furtherconfigured to: measure the parameter at the first location on thestructure before inoculating the structure with the sample; and comparethe parameter measured at the first location on the structure afterinoculating the structure with the sample with the parameter measured atthe first location on the structure before inoculating the structurewith the sample.
 13. A system for culturing cells, the systemcomprising: a structure for culturing cells, the structure comprising:growth medium regions formed in a plurality of pores on a surface of thestructure, wherein each of the growth medium regions includes a growthmedium surface configured to receive and promote growth in a cell thatis being cultured; and a non-growth medium comprising the plurality ofpores, wherein sidewalls of the pores are coated with a hydrophiliccoating, and wherein a topmost surface of the non-growth medium iscoated with a hydrophobic coating; and a device configured for measuringa parameter on the structure after inoculating the structure with asample, the device comprising: a first optical waveguide at the firstlocation on a surface of the structure; a second optical waveguide at asecond location on a surface of the structure; and a processorconfigured to detect light emitted from the first optical waveguide. 14.The system of claim 13, wherein the first optical waveguide and thesecond optical waveguide each comprise a same optical waveguide materialand the non-growth medium has a refractive index that is less than arefractive index of the optical waveguide material.